\chapter{Algorithm}
\input{3.methods.tex}
-\chapter{Conclusion}
-\input{4.conclusion.tex}
-
\section{Discussion}
-\input{5.discussion.tex}
+\input{4.discussion.tex}
\chapter{Appendices}
-\input{6.appendices.tex}
+\input{5.appendices.tex}
\bibliographystyle{plain}
\bibliography{thesis}